個人經歷
先後在中科院遺傳所，中科院植物所，中國水稻所，美國華盛頓大學，美國北卡州立大學和法國國家農業實驗站進行客座研究和短期進修。並於1999年入選中方代表團，出席在斯洛維尼亞舉行的“首屆中-斯生物技術交流大會”。於2000年8月至2001年12月在瑞典農業大學進行了為期一年半的博士後研究，參加瑞典農大和瑞典皇家工學院聯合主持的林木基因組研究計畫。2002年初美國能源部啟動了楊樹全基因組的測序計畫，本人與該計畫總協調人Gerald A. Tuskan先生取得了聯繫，並獲得項目資助，於2002年1月轉到美國能源部橡樹嶺國家實驗室，參加楊樹全基因組測序計畫研究。楊樹的全基因組測序已於2004年11月份發布完成。在該計畫中主要承擔了序列的組裝工作。
教育經歷
2009.7至今 教授，博士生導師，南京林業大學
·2005. 8-2009.6 R&D staff scientist,美國能源部Oak Ridge National Laboratory；南京林業大學，教授
· 2002.1-2005.7 博士後, Oak Ridge National Laboratory；南京林業大學副教授
· 2000.8-2001.12 博士後,瑞典農業大學
· 1997.7-2000.7 講師,南京林業大學.
研究項目
先後主持過二項國家自然科學基金項目，主持瑞典國際基金項目一項，並獲霍英東基金會資助項目一項。先後參加國家自然科學基金重點項目，863項目及國家科委攻關項目等多項研究
| 楊樹抗鏽病基因定位與克隆 | 自然基金 | 2010 | 30 | PI | |
| 楊樹未組裝序列骨架沿染色體的組裝 | 自然基金 | 2010 | 32 | PI | |
| 我國油茶主要栽培品種的基因型分型鑑定技術研究 | 高技術 | 2009 | 89 | PI | |
| 木材品質性狀QTL定位、解析與克隆 | 攻關 | 2011 | 608 | PI | |
| 國家傑出青年基金 | 自然基金 | 2011 | 200 | PI | |
| 杞柳基因組拼接技術及關鍵儀器引進 | 攻關 | 2011 | 50 | pI |
代表性論文
參加工作已來，，已發表論文37篇，其中16篇為SCI收錄論文。參與王明庥院士主編的《林木遺傳育種》一書的撰寫，該書獲國家科委優秀科技圖書一等獎。文章發表在Science、Nature、Plant Journal、New Phytologist、Plant Physiology、Genome Research、Heredity、Tree Genetics & Genomes、PloS ONE、遺傳、Molecular Breeding等國際國內主流期刊 。
•Ye, Qiaolin Ye, Ning; Yin, Tongming : Enhanced multi-weight vector projection support vector machine ,Pattern Recognition Letters, v 42, n 1, p 91-100, June 1, 2014
•Neighbors' distribution property and sample reduction for support vector machines, APPLIED SOFT COMPUTING,2014,V16:201-209
•Boundary detection and sample reduction for one-class Support Vector Machines,NEUROCOMPUTING, V123:166-173
•Muchero, W., M. M. Sewell, et al. (2013). Genome Anchored QTLs for Biomass Productivity in Hybrid Populus Grown under Contrasting Environments. PLoS One 8(1).
•Li, S., T. Shi, et al. (2013). "Methods for breaking the dormancy of eastern redbud (Cercis canadensis) seeds." Seed Science and Technology 41(1): 27-35.
•Wan, Z. B., Y. R. Li, et al. (2013). "Melampsora larici-populina, the main rust pathogen, causes loss in biomass production of black cottonwood plantations in the south of China." Phytoparasitica 41(3): 337-344.
•Liu, J. J., T. M. Yin, et al. (2013). "Transcriptome Analysis of the Differentially Expressed Genes in the Male and Female Shrub Willows (Salix suchowensis)." PLoS One 8(4)
•Marker-aided selection 1 of polyploid poplars Bioenergy Res，EI SCI 2013
•Discovey and experimental analysis of microsatellites in an oil woody plant Cameallia chekinagoleosa. Plant Syst Evol,correspondence SCI 2013
•Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus TREE PHYSIOLOGY SCI 2012, 32 (5): 626-638
•The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis Tree Genetics & Genomes SCI (2012) 8:559–571
•Genome-wide detection of genetic loci triggering uneven descending of gametes from a natural hybrid pine Tree Genetics & Genomes，通訊 SCI 2012,DOI 10.1007/s11295-012-0524-5
•基於Otsu算法的木材缺陷圖像分割 計算機與數字工程 2012,276: 116-118
•楊樹鏽菌表達序列微衛星分析及EST-SSR標記開發 東北林業大學學報 2012,40:76-80
•油茶基因組微衛星特徵分析 南京林業大學學報 2012,36:47-50
•環境條件和播後覆土對水杉種子出苗率的影響 中南林業科技大學學報 2012,32:26-30
•林木遺傳育種基礎研究熱點述評，林業科學，2012,48:150-154 林業科學 2012,48:150-154
•基於改進的Affinity Propagation聚類的木材缺陷識別 工 程 數 學 學 報 2012， 49：600-606
•Establish the ideal statistical model tracking the Dynamic growth rhythm for progeny in a full-sib family of Salix xuzhouenesis 4th International Conference on Pulping, Papermaking and Biotechnology, ISTP 2012,Nanjing China
•DETECTION AND FUNCTIONAL ANALYSES OF MICROSATELLITES IN CODING SEQUENCES OF PINES 4th International Conference on Pulping, Papermaking and Biotechnology, ISTP 2012,Nanjing China
•Yin, T., X. Zhang, et al. (2010). "Differential detection of genetic Loci underlying stem and root lignin content in Populus." PLoS One 5(11): e14021.
•Li, S., Y. Chen, et al. (2010)."Potential chromosomal introgression barriers revealed by linkage analysis in a hybrid of Pinus massoniana and P. hwangshanensis." BMC Plant Biol 10: 37.
•Compare gene densities between chromosomes that share large duplicated segments and survey gene coverage by ESTs in polar genome. Genomics and applied biology 通訊作者 2010，29(3)
•桉樹EST序列中微衛星含量及相關特徵分析 植物學報通訊作者 國內 2010，45（3）
•Characterization of microsatellites in the coding regions of the Populus genome Molecular Breeding通訊作者 SCI DOI: 10.1007/s11032-010-9413-5
•Bioinformatics-Based Identification of Candidate Genes from QTLs Associated with Cell Wall Traits in Populus Bioenergy Res SCI 2010，DOI 10.1007/s12155-009-9060-z
•Characteristics of microsatellites in the transcript sequences of the Laccaria bicolor genome Journal of Microbiology and Applied Biotechnology通訊作者 SCI 2010, 20（3）
•林木基因組和功能基因克隆研究進展與展望 遺傳 國內 2010, 32(7)
•An Improved Approach for Mapping Quantitative Trait Loci in a Pseudo-Testcross: Revisiting a Poplar Mapping Study. Bioinformatics and Biology Insights 國外 SCI 2010:4
•BoxCox轉換對數量性狀基因座位分析的影響及其套用 南京林業大學學報. 國內 2010，34（3）
•黃山松不同生理生化指標隨海拔高度變化趨勢研究 東北林業大學學報通訊作者 國內 2010,38（6）
•Microsatellite primers resource developed from the mapped sequence scaffolds of Nisqually-1 genome New Phytologist SCI 2009, 181
•A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species enables localization of a large fraction of the unassembled Populus trichocarpa genome sequence Plant Journal SCI (2009) 58
•Detection of quantitative trait loci influencing growth trajectories of adventitious roots in Populus using functional mapping Tree Genetics & Genomes 國外 SCI (2009) 5
•A genetic linkage map for the ectomycorrhizal fungus New Phytologist 國外 SCI (2008) 180
•Comparative Analysis of F-Box Proteins in Arabidopsis, Poplar and Rice Suggests Differential Proteolytic Pathway Mediated through F-Box Protein between Woody Perennial and Herbaceous Annual Plants Plant Physiology SCI 2008,148
•Genome structure and emerging evidence of an incipient sex chromosome in Populus Genome Research SCI 18: 422-430, 2008.
•A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map Plant Journal SCI 50(6):1063-78, 2007
•A dense linkage map of hybrid cottonwood (Populus fremontii_P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree Heredity SCI (2008) 100
•Map and Analysis of Microsatellites in Genome of Populus: the First Sequenced Perennial Plant SCIENCE IN CHINA SERIES C-LIFE SCIENCES通訊作者 SCI 50(5), 690-699, 2007
•植物細胞壁伸展蛋白研究述評 林業科學，通訊作者 國內 2010，46：144-152
•The Bioenergy Science Center (BESC) and Overcoming Recalcitrance of Populus to Biofuel Production. IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL 國外 SCI 2010, 46:48 -
•楊樹微衛星序列對基因表達頻率影響及表達序列中微衛星特徵分析 南京林業大學學報，通訊 國內 2011，35:11-14
•松樹、楊樹及桉樹表達基因序列微衛星比對分析 基因組與套用生物學，通訊作者 國內 2011，30：103-109
•The genome of black cottonwood, Populus trichocarpa (Torr. & Gray ex Brayshaw) SCIENCE 國外 SCI 313: 1596-1604, 2006
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•The genome sequence of the basidiomycete fungus Laccaria bicolor provides insightsinto the mycorrhizal symbiosis Nature SCI 452:88-93, 2008 -
•Phenotypic variation in growth and biomass distribution for two advanced-generation pedigrees of hybrid poplar(Populus spp.) CANADIAN JOURNAL OF FOREST RESEARCH 國外 SCI 35 (8): 1779-1789 AUG,2005
•Mapping the Rust Resistant Loci MXC3 and MER in P. trichocarpa and Assessing the Intermarker Linkage Disequilibrium in MXC3 Region NEW PHYTOLOGIST 國外 SCI 164 (1): 95-105 OCT 2004
•Large-scale Heterospecific Segregation Distortion in Populus Revealed by a dense Genetic Map THEORETICAL AND APPLIED GENETICS 國外 SCI 109 (3): 451-463 AUG 2004
•Characterization of Microsatellites Revealed by Genomic Sequencing of Populus trichocarpa CAN. J. FOR. RES. SCI 34(1): 85-93 (2004)
•A likelihood approach for mapping growth trajectories using dominant markers in a phase-unknown full-sib family THEOR APPL GENET 國外 SCI 108 (4): 699-705 FEB2004
•馬尾松表達序列標籤多態性初步分析 林業科學 40(6):176-180. Nov 2004
•Nearly complete genetic maps of Pinus sylvestris L. (Scots pine) constructed by AFLP marker analysis in a full-sib family THEOR APPL GENET 國外 SCI 106 (6): 1075-1083 APR 2003
•利用分子標記技術對林木近緣種進行遺傳鑑別的研究 林業科學 國內 39(3): 130-135, 2003
•Analysis of genetic structure of natural populations of Castanopsis fargesii by RAPDs ACTA BOT SIN 國內 SCI 44 (11): 1321- 1326 NOV 2002
•Molecular linkage maps of the Populus genome GENOME 國外 SCI 45 (3): 541-555 JUN 2002
•Preliminary interspecific genetic maps of the Populus genome constructed from RAPD markers GENOME 國外 SCI 44 (4): 602-609 AUG 2001
•Host effect on genetic variation of Marssonina brunnea pathogenic to poplars THEOR APPL GENET 國外 SCI 100 (3-4): 614-620 FEB 2000
•History and progress of the genomics studies in the model system of perennial plant species ACTA PHYTOTAXONOMICA SINICA 國內 SCI 42 (5): 464-479 SEP 2004
•Quantitative trait loci for growth trajectories in Populus GENET RES 國外 SCI 81 (1): 51-64 FEB 2003
•A logistic mixture model for characterizing genetic determinants causing differentiation in growth trajectories GENET RES 國外 SCI 79 (3): 235-245 JUN 2002
•用SSR研究栲樹群體遺傳結構 植物學報 國內 SCI 43（4）：409-412，2001
