在研項目
1. 鱖魚攝食行為發育及特殊餵食方式的比較研究（國家自然科學基金面上項目，2007－2009）
2. 東亞晚中生代以來淡水魚類主要類群的演化格局與地質背景（國家自然科學基金重點項目，2005－2009）
3. 鯉形目魚類生命之樹Cypriniformes——Tree of Life（國際合作項目，2004－2009）
4. 平鰭鰍科魚類分子系統發育及物種分化事件研究（國家自然科學基金面上項目，2008－2010）
5. 鰟鮍魚類繁殖行為生態學研究（國家自然科學基金面上項目，2010－2012）
近年來發表文章
2005年
Wang, X & Liu, H. Phylogenetic relationships of the Chinese cyprinid genus Rhinogobio Bleeker (Teleostei: Cyprinidae) based on sequences of the mitochondrial DNA control region, with comments on character adaptations. Hydrobiologia, 2005, 532: 215-220.
Tang, Q., Liu, H., Yang, X., and Nakajima, T. Molecular and morphological data suggest that Spinibarbus caldwelli (Nichols) (Teleostei: Cyprinidae) is a valid species. Ichthyological Research. 2005, 52(1): 77-82.
2006年
Tang, Q., Liu, H., Mayden, R. & Xiong, B. Comparison of evolutionary rates in the mitochondrial DNA cytochrome b gene and control region and their implications for phylogeny of the Cobitoidea (Teleostei: Cypriniformes). Molecular phylogenetics and Evolution, 2006,39:347-357.
Yang, J., He, S., Freyhof, J., Witte, K. & Liu, H. The phylogenetic relationships of the Gobioninae (Teleostei: Cyprinidae) inferred from mitochondrial cytochrome b gene sequences. Hydrobiologia, 2006,553:255-266.
Liu, H., Zhu, Y., Smith, C. & Reichard, M. Evidence of host specificity and congruence between phylogenies of bitterlings and freshwater mussels. Zoological Studies, 2006, 45(3):428-434.
Reichard M., Ondracková, M., Przybylski, M., Liu, H. & Smith, C. The costs and benefits in an unusual symbiosis: experimental evidence that bitterling fish (Rhodeus sericeus) are parasites of unionid mussels inEurope. Journal of Evolutionary, 2006, 19:788-796.
曾燏，劉煥章，沈建忠，2006．鰟鮍魚類產卵時對河蚌鰓不同位置的選擇．動物學報，52 (2)：272-278．
朱玉蓉，劉煥章，2006．大鰭鱊基於細胞色素b基因序列的遺傳變異及生物地理過程．水生生物學報，30(2)：134-140.
2007年
Reichard M, Przybylski M, Kaniewska P, Liu H, Smith C. A possible evolutionary lag in the relationship between freshwater mussels and European bitterling. Journal of Fish Biology, 2007, 70: 709-725.
Reichard M, Liu H, Smith C. The co-evolutionary relationship between bitterling fishes and freshwater mussels: insights from interspecific comparisons. Evolutionary Ecology Research, 2007, 9: 239-259.
Smith C, Zhu Y, Liu H, Reichard M. Deceptive female oviposition behaviour elicits male ejaculation in the European bitterling. Journal of Fish Biology, 2007, 71: 1841-1846
2008年
Chang M, Wang X, Liu H, Miao D, Wu G, Liu J, Li Q, Sun Z, Wang N. Extraordinarily thich-boned fish linked to the aridification of the Qaidam Basin (northern Tibetan Plateau). PNAS, 2008, 105(36):13246-13251.
Zhang L, Tang Q, Liu H. Phylogeny and speciation process of the eastern Asian cyprinid genus Sarcocheilichthys. Journal of Fish Biology, 2008, 72: 1122-1137.
Tang Q, Freyhof J, Xiong B, Liu H. Multiple invasions of Europe by East Asian cobitid loaches (Teleostei: Cobitidae). Hydrobiologia, 2008, 605:17-28.
He Y, Tang Q, Wang J, Liu H, Tan D. Population differentiation of Procypris rabaudi(Tchang) in the upper reaches of theYangtze Riverrevealed by mitochondrial DNA and RAPD markers. Genes & Genomics, 2008, 30(3):223-233.
唐瓊英，俞丹，劉煥章．斑紋薄鰍 Leptobotia zebra應該為斑紋沙鰍 Sinibotia zebra．動物學研究，2008，29（1）: 1-9．
熊玉宇，喬曄，劉煥章，譚德清．犁頭鰍早期發育．水生生物學報，2008，32（3）：424－433．
2009年
Tang Q, Getahun A, Liu H. Multiple In-to-Africa dispersals of labeonin fishes (Teleostei: Cyprinidae) revealed by molecular phylogenetic analysis. Hydrobiologia, 2009, 632:261-271.
Yu D, Ding B, Liu H. Isolation and characterization of 11 polymorphic microsatellite loci for the Saurogobio dabryi(Teleostei: Cyprinidae). Conservation Genetics Resources, 2009, accepted.
劉思情，張家波，唐瓊英，劉煥章．基於ND4和ND5基因序列分析的鰍超科魚類系統發育關係．動物學研究，2009，已接收．
